Konza LTER Publications

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Book Chapter
Jumpponen A, Mandyam KG. Adoption and utility of an Arabidopsis model to dissect endophyte symbioses. In: Schneider C, Leifert C, Feldmann F Endophytes in plant protection: the state of the art. Endophytes in plant protection: the state of the art. Braunschweig: Deutsche Phytomedizinische Gesellschaft; 2013:244 -247.
Jumpponen A. Analysis of rhizosphere fungal communities using rRNA and rDNA. In: Varma A, Kharkwal AC Symbiotic Fungi, Soil Biology. Symbiotic Fungi, Soil Biology. Springer-Verlag, Berlin; 2009:29 -40. Available at: http://link.springer.com/chapter/10.1007%2F978-3-540-95894-9_2.
Kageyama SA, Mandyam KG, Jumpponen A. Diversity, function and potential applications of the root-associated endophytes. In: Varma A Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Springer-Verlag, Berlin; 2008:29 -59.
Mandyam KG, Jumpponen A. Unraveling the dark septate endophyte functions: insights from the Arabidopsis model. In: Verma VC, Gange AC Advances in Endophytic Research. Advances in Endophytic Research. Springer-Verlag, Berlin; 2014:115 -141. doi:10.1007/978-81-322-1575-2_6.
Journal Article
Mandyam KG, Jumpponen A. Abundance and possible functions of the root-colonising dark septate endophytic fungi. Studies in Mycology. 2005;53:173 -189. doi:10.3114/sim.53.1.173.
Zeglin LH, Bottomley PJ, Jumpponen A, et al. Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales. Ecology. 2013;94:2334 -2345. doi:10.1890/12-2018.1.
Jumpponen A. Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots. Mycorrhiza. 2011;21:453 -464. doi:10.1007/s00572-010-0358-7.
Mandyam KG, Roe J, Jumpponen A. Arabidopsis thaliana model system reveals a continuum of responses to root endophyte colonization. Fungal Biology. 2013;117:250 -260. doi:10.1016/j.funbio.2013.02.001.
Jumpponen A, Johnson LC. Can rDNA analyses of diverse fungal communities in soil and rootsdetect effects of environmental manipulations--a case study from tallgrass prairie. Mycologia. 2005;97:1177 -1194. doi:10.3852/mycologia.97.6.1177.
Dodds WK, Zeglin LH, Ramos RJ, et al. Connections and feedback: Aquatic, plant, and soil microbiomes in heterogeneous and changing environments. BioScience. 2020;70(7):548 - 562. doi:10.1093/biosci/biaa046.
Lagueux D, Jumpponen A, Porras-Alfaro A, et al. Experimental drought re‐ordered assemblages of root‐associated fungi across North American grasslands. Journal of Ecology. 2021;109(2):776 - 792. doi:10.1111/1365-2745.13505.
Prestat E, David M, Hultman J, et al. FOAM: Functional Ontology Assignments for Metagenomes: a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. 2014;42: e145. doi:10.1093/nar/gku702.
Mandyam KG, Loughlin T, Jumpponen A. Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia. 2010;102:813 -821. doi:10.3852/09-212.
Jumpponen A, Jones KL, Mattox JD, Yeage C. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology. 2010;19:41 -53. doi:10.1111/j.1365-294X.2009.04483.x.
Jumpponen A, Jones KL. Massively parallel 454-sequencing of Quercus macrocarpa phyllosphere fungal communities indicates reduced richness and diversity in urban environments. New Phytologist. 2009;184:438 -448. doi:10.1111/j.1469-8137.2009.02990.x.
Chowdhury TRoy, Lee J-Y, Bottos EM, et al. Metaphenomic response of a native prairie soil microbiome to moisture perturbations. Hallam SJ. mSystems. 2019;4:e00061-19. doi:10.1128/mSystems.00061-19.
Jumpponen A, Keating K, Gadbury GL, Jones KL, Mattox JD. Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage. Plant Signaling and Behaviour. 2010;5:1157 -1161. doi:10.4161/psb.5.9.12681.
Mandyam KG, Jumpponen A. Mutualism-parasitism paradigm synthesized from results of root-endophyte models. Frontiers in Microbiology. 2015;5: e776. doi:10.3389/fmicb.2014.00776.
Jumpponen A, Trowbridge J, Mandyam KG, Johnson LC. Nitrogen enrichment causes minimal changes in arbuscular mycorrhizal colonization but shifts community composition - evidence from rDNA data. Biology and Fertility of Soils. 2005;41:217 -224. doi:10.1007/s00374-005-0845-8.
Dea HI, Urban A, Kazarina A, et al. Precipitation, not land use, primarily determines the composition of both plant and phyllosphere fungal communities. Frontiers in Fungal Biology. 2022;3:805225. doi:10.3389/ffunb.2022.805225.
Pellegrini AFA, Hobbie SE, Reich PB, et al. Repeated fire shifts carbon and nitrogen cycling by changing plant inputs and soil decomposition across ecosystems. Ecological Monographs. 2020;90(4):e01409. doi:10.1002/ecm.1409.
Brown SP, Veach AM, Rigdon-Huss AR, et al. Scraping the bottom of the barrel: are rare high throughput sequences artifacts?. Fungal Ecology. 2015;13:221 -225. doi:10.1016/j.funeco.2014.08.006.
Mandyam KG, Jumpponen A. Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment. Mycorrhiza. 2008;18:145 -155. doi:10.1007/s00572-008-0165-6.
Jumpponen A, Jones KL. Seasonally dynamic fungal communities in Quercus macrocarpa phyllosphere differ among urban and nonurban environments. New Phytologist. 2010;186:496 -513. doi:10.1111/j.1469-8137.2010.03197.x.
Mandyam KG, Fox C, Jumpponen A. Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie. Mycorrhiza. 2012;22:109 -119. doi:10.1007/s00572-011-0386-y.
Narayanan A, Ismert KJ, Smith MD, Jumpponen A. Soil fungal communities are compositionally resistant to drought manipulations – Evidence from culture-dependent and culture-independent analyses. Fungal Ecology. 2021;51:101062. doi:10.1016/j.funeco.2021.101062.
Carson CM, Jumpponen A, Blair JM, Zeglin LH. Soil fungal community changes in response to long-term fire cessation and N fertilization in tallgrass prairie. Fungal Ecology. 2019;41:45 - 55. doi:10.1016/j.funeco.2019.03.002.
Veach AM, Stagen JC, Brown SP, Dodds WK, Jumpponen A. Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology. 2016;25(18):4674 - 4688. doi:10.1111/mec.13784.
Unterseher M, Dorman CF, Jumpponen A, et al. Species abundance distributions and richness estimations in fungal metagenomics – lessons learned from community ecology. Molecular Ecology. 2011;20:275 -285. doi:10.1111/j.1365-294X.2010.04948.x.
Jumpponen A, Jones KL. Tallgrass prairie soil fungal communities are resilient to climate change. Fungal Ecology. 2014;10:44 -57. doi:10.1016/j.funeco.2013.11.003.
Nelson W, Anderson L, Wu R, et al. Terabase metagenome sequencing of grassland soil microbiomes. Microbiology Resource Announcements. 2020;9(32):00718-20. doi:10.1128/MRA.00718-20.
Veach AM, Troia MJ, Jumpponen A, Dodds WK. Top - down effects of a grazing, omnivorous minnow (Campostoma anomalum) on stream microbial communities. Freshwater Science. 2018;37(1):121-133. doi:10.1086/696292.
Jumpponen A, Jones KL, Blair JM. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia. 2010;102:1027 -1041. doi:10.3852/09-316.
Mino L, Kolp MR, Fox S, Reazin C, Zeglin LH, Jumpponen A. Watershed and fire severity are stronger determinants of soil chemistry and microbiomes than within-watershed woody encroachment in a tallgrass prairie system. FEMS Microbiology Ecology. 2021;97(12):fiab154. doi:10.1093/femsec/fiab154.
Veach AM, Dodds WK, Jumpponen A. Woody plant encroachment, and its removal, impact bacterial and fungal communities across stream and terrestrial habitats in a tallgrass prairie ecosystem. FEMS Microbiology Ecology. 2015;91(10):fiv109. doi:10.1093/femsec/fiv109.