Konza LTER Publications

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Book Chapter
Jumpponen A, Mandyam KG. Adoption and utility of an Arabidopsis model to dissect endophyte symbioses. In: Schneider C, Leifert C, Feldmann F Endophytes in plant protection: the state of the art. Endophytes in plant protection: the state of the art. Braunschweig: Deutsche Phytomedizinische Gesellschaft; 2013:244 -247.
Jumpponen A. Analysis of rhizosphere fungal communities using rRNA and rDNA. In: Varma A, Kharkwal AC Symbiotic Fungi, Soil Biology. Symbiotic Fungi, Soil Biology. Springer-Verlag, Berlin; 2009:29 -40. Available at: http://link.springer.com/chapter/10.1007%2F978-3-540-95894-9_2.
Kageyama SA, Mandyam KG, Jumpponen A. Diversity, function and potential applications of the root-associated endophytes. In: Varma A Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Springer-Verlag, Berlin; 2008:29 -59.
Mandyam KG, Jumpponen A. Unraveling the dark septate endophyte functions: insights from the Arabidopsis model. In: Verma VC, Gange AC Advances in Endophytic Research. Advances in Endophytic Research. Springer-Verlag, Berlin; 2014:115 -141. doi:10.1007/978-81-322-1575-2_6.
Journal Article
Mandyam KG, Jumpponen A. Abundance and possible functions of the root-colonising dark septate endophytic fungi. Studies in Mycology. 2005;53:173 -189. doi:10.3114/sim.53.1.173.
Zeglin LH, Bottomley PJ, Jumpponen A, et al. Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales. Ecology. 2013;94:2334 -2345. doi:10.1890/12-2018.1.
Jumpponen A. Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots. Mycorrhiza. 2011;21:453 -464. doi:10.1007/s00572-010-0358-7.
Mandyam KG, Roe J, Jumpponen A. Arabidopsis thaliana model system reveals a continuum of responses to root endophyte colonization. Fungal Biology. 2013;117:250 -260. doi:10.1016/j.funbio.2013.02.001.
Jumpponen A, Johnson LC. Can rDNA analyses of diverse fungal communities in soil and rootsdetect effects of environmental manipulations--a case study from tallgrass prairie. Mycologia. 2005;97:1177 -1194. doi:10.3852/mycologia.97.6.1177.
Prestat E, David M, Hultman J, et al. FOAM: Functional Ontology Assignments for Metagenomes: a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. 2014;42: e145. doi:10.1093/nar/gku702.
Mandyam KG, Loughlin T, Jumpponen A. Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia. 2010;102:813 -821. doi:10.3852/09-212.
Jumpponen A, Jones KL, Mattox JD, Yeage C. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology. 2010;19:41 -53. doi:10.1111/j.1365-294X.2009.04483.x.
Jumpponen A, Jones KL. Massively parallel 454-sequencing of Quercus macrocarpa phyllosphere fungal communities indicates reduced richness and diversity in urban environments. New Phytologist. 2009;184:438 -448. doi:10.1111/j.1469-8137.2009.02990.x.
Jumpponen A, Keating K, Gadbury GL, Jones KL, Mattox JD. Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage. Plant Signaling and Behaviour. 2010;5:1157 -1161. doi:10.4161/psb.5.9.12681.
Mandyam KG, Jumpponen A. Mutualism-parasitism paradigm synthesized from results of root-endophyte models. Frontiers in Microbiology. 2015;5: e776. doi:10.3389/fmicb.2014.00776.
Jumpponen A, Trowbridge J, Mandyam KG, Johnson LC. Nitrogen enrichment causes minimal changes in arbuscular mycorrhizal colonization but shifts community composition - evidence from rDNA data. Biology and Fertility of Soils. 2005;41:217 -224. doi:10.1007/s00374-005-0845-8.
Carson CM, Jumpponen A, Blair JM, Zeglin LH. Plant and environmental heterogeneity differentially mediate soil bacterial and fungal responses to long-term changes in grassland management. Fungal Ecology. In Press.
Brown SP, Veach AM, Rigdon-Huss AR, et al. Scraping the bottom of the barrel: are rare high throughput sequences artifacts?. Fungal Ecology. 2015;13:221 -225. doi:10.1016/j.funeco.2014.08.006.
Mandyam KG, Jumpponen A. Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment. Mycorrhiza. 2008;18:145 -155. doi:10.1007/s00572-008-0165-6.
Jumpponen A, Jones KL. Seasonally dynamic fungal communities in Quercus macrocarpa phyllosphere differ among urban and nonurban environments. New Phytologist. 2010;186:496 -513. doi:10.1111/j.1469-8137.2010.03197.x.
Mandyam KG, Fox C, Jumpponen A. Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie. Mycorrhiza. 2012;22:109 -119. doi:10.1007/s00572-011-0386-y.
Veach AM, Stagen JC, Brown SP, Dodds WK, Jumpponen A. Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology. 2016;25(18):4674 - 4688. doi:10.1111/mec.13784.
Unterseher M, Dorman CF, Jumpponen A, et al. Species abundance distributions and richness estimations in fungal metagenomics – lessons learned from community ecology. Molecular Ecology. 2011;20:275 -285. doi:10.1111/j.1365-294X.2010.04948.x.
Jumpponen A, Jones KL. Tallgrass prairie soil fungal communities are resilient to climate change. Fungal Ecology. 2014;10:44 -57. doi:10.1016/j.funeco.2013.11.003.
Jumpponen A, Jones KL, Blair JM. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia. 2010;102:1027 -1041. doi:10.3852/09-316.
Veach AM, Dodds WK, Jumpponen A. Woody plant encroachment, and its removal, impact bacterial and fungal communities across stream and terrestrial habitats in a tallgrass prairie ecosystem. FEMS Microbiology Ecology. 2015;91(10):fiv109. doi:10.1093/femsec/fiv109.