Konza LTER Publications

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Journal Article
Veach AM, Dodds WK, Jumpponen A. Woody plant encroachment, and its removal, impact bacterial and fungal communities across stream and terrestrial habitats in a tallgrass prairie ecosystem. FEMS Microbiology Ecology. 2015;91(10):fiv109. doi:10.1093/femsec/fiv109.
Jumpponen A, Jones KL, Blair JM. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia. 2010;102:1027 -1041. doi:10.3852/09-316.
Veach AM, Troia MJ, Jumpponen A, Dodds WK. Top - down effects of a grazing, omnivorous minnow (Campostoma anomalum) on stream microbial communities. Freshwater Science. 2018;37(1):121-133. doi:10.1086/696292.
Nelson W, Anderson L, Wu R, et al. Terabase metagenome sequencing of grassland soil microbiomes. Microbiology Resource Announcements. In Press.
Jumpponen A, Jones KL. Tallgrass prairie soil fungal communities are resilient to climate change. Fungal Ecology. 2014;10:44 -57. doi:10.1016/j.funeco.2013.11.003.
Unterseher M, Dorman CF, Jumpponen A, et al. Species abundance distributions and richness estimations in fungal metagenomics – lessons learned from community ecology. Molecular Ecology. 2011;20:275 -285. doi:10.1111/j.1365-294X.2010.04948.x.
Veach AM, Stagen JC, Brown SP, Dodds WK, Jumpponen A. Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology. 2016;25(18):4674 - 4688. doi:10.1111/mec.13784.
Carson CM, Jumpponen A, Blair JM, Zeglin LH. Soil fungal community changes in response to long-term fire cessation and N fertilization in tallgrass prairie. Fungal Ecology. 2019;41:45 - 55. doi:10.1016/j.funeco.2019.03.002.
Mandyam KG, Fox C, Jumpponen A. Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie. Mycorrhiza. 2012;22:109 -119. doi:10.1007/s00572-011-0386-y.
Jumpponen A, Jones KL. Seasonally dynamic fungal communities in Quercus macrocarpa phyllosphere differ among urban and nonurban environments. New Phytologist. 2010;186:496 -513. doi:10.1111/j.1469-8137.2010.03197.x.
Mandyam KG, Jumpponen A. Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment. Mycorrhiza. 2008;18:145 -155. doi:10.1007/s00572-008-0165-6.
Brown SP, Veach AM, Rigdon-Huss AR, et al. Scraping the bottom of the barrel: are rare high throughput sequences artifacts?. Fungal Ecology. 2015;13:221 -225. doi:10.1016/j.funeco.2014.08.006.
Pellegrini AFA, Hobbie SE, Reich PB, et al. Repeated fire shifts carbon and nitrogen cycling by changing plant inputs and soil decomposition across ecosystems. Ecological Monographs. In Press. doi:10.1002/ecm.1409.
Jumpponen A, Trowbridge J, Mandyam KG, Johnson LC. Nitrogen enrichment causes minimal changes in arbuscular mycorrhizal colonization but shifts community composition - evidence from rDNA data. Biology and Fertility of Soils. 2005;41:217 -224. doi:10.1007/s00374-005-0845-8.
Mandyam KG, Jumpponen A. Mutualism-parasitism paradigm synthesized from results of root-endophyte models. Frontiers in Microbiology. 2015;5: e776. doi:10.3389/fmicb.2014.00776.
Jumpponen A, Keating K, Gadbury GL, Jones KL, Mattox JD. Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage. Plant Signaling and Behaviour. 2010;5:1157 -1161. doi:10.4161/psb.5.9.12681.
Chowdhury TRoy, Lee J-Y, Bottos EM, et al. Metaphenomic response of a native prairie soil microbiome to moisture perturbations. Hallam SJ. mSystems. 2019;4:e00061-19. doi:10.1128/mSystems.00061-19.
Jumpponen A, Jones KL. Massively parallel 454-sequencing of Quercus macrocarpa phyllosphere fungal communities indicates reduced richness and diversity in urban environments. New Phytologist. 2009;184:438 -448. doi:10.1111/j.1469-8137.2009.02990.x.
Jumpponen A, Jones KL, Mattox JD, Yeage C. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology. 2010;19:41 -53. doi:10.1111/j.1365-294X.2009.04483.x.
Mandyam KG, Loughlin T, Jumpponen A. Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia. 2010;102:813 -821. doi:10.3852/09-212.
Prestat E, David M, Hultman J, et al. FOAM: Functional Ontology Assignments for Metagenomes: a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. 2014;42: e145. doi:10.1093/nar/gku702.
Dodds WK, Zeglin LH, Ramos RJ, et al. Connections and Feedback: Aquatic, Plant, and Soil Microbiomes in Heterogeneous and Changing Environments. BioScience. 2020;70(7):548 - 562. doi:10.1093/biosci/biaa046.
Jumpponen A, Johnson LC. Can rDNA analyses of diverse fungal communities in soil and rootsdetect effects of environmental manipulations--a case study from tallgrass prairie. Mycologia. 2005;97:1177 -1194. doi:10.3852/mycologia.97.6.1177.
Mandyam KG, Roe J, Jumpponen A. Arabidopsis thaliana model system reveals a continuum of responses to root endophyte colonization. Fungal Biology. 2013;117:250 -260. doi:10.1016/j.funbio.2013.02.001.
Jumpponen A. Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots. Mycorrhiza. 2011;21:453 -464. doi:10.1007/s00572-010-0358-7.
Zeglin LH, Bottomley PJ, Jumpponen A, et al. Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales. Ecology. 2013;94:2334 -2345. doi:10.1890/12-2018.1.
Mandyam KG, Jumpponen A. Abundance and possible functions of the root-colonising dark septate endophytic fungi. Studies in Mycology. 2005;53:173 -189. doi:10.3114/sim.53.1.173.
Book Chapter
Mandyam KG, Jumpponen A. Unraveling the dark septate endophyte functions: insights from the Arabidopsis model. In: Verma VC, Gange AC Advances in Endophytic Research. Advances in Endophytic Research. Springer-Verlag, Berlin; 2014:115 -141. doi:10.1007/978-81-322-1575-2_6.
Kageyama SA, Mandyam KG, Jumpponen A. Diversity, function and potential applications of the root-associated endophytes. In: Varma A Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Springer-Verlag, Berlin; 2008:29 -59.
Jumpponen A. Analysis of rhizosphere fungal communities using rRNA and rDNA. In: Varma A, Kharkwal AC Symbiotic Fungi, Soil Biology. Symbiotic Fungi, Soil Biology. Springer-Verlag, Berlin; 2009:29 -40. Available at: http://link.springer.com/chapter/10.1007%2F978-3-540-95894-9_2.
Jumpponen A, Mandyam KG. Adoption and utility of an Arabidopsis model to dissect endophyte symbioses. In: Schneider C, Leifert C, Feldmann F Endophytes in plant protection: the state of the art. Endophytes in plant protection: the state of the art. Braunschweig: Deutsche Phytomedizinische Gesellschaft; 2013:244 -247.