Konza LTER Publications
Biogeography of root-associated endophytes. In: Biogeography of Mycorrhizal Symbiosis. Cham: Springer International Publishing; 2017:195-222. doi:10.1007/978-3-319-56363-3.
. Adoption and utility of an Arabidopsis model to dissect endophyte symbioses. In: Endophytes in plant protection: the state of the art. Endophytes in plant protection: the state of the art. Braunschweig: Deutsche Phytomedizinische Gesellschaft; 2013:244 -247.
. Analysis of rhizosphere fungal communities using rRNA and rDNA. In: Symbiotic Fungi, Soil Biology. Symbiotic Fungi, Soil Biology. Springer-Verlag, Berlin; 2009:29 -40. Available at: http://link.springer.com/chapter/10.1007%2F978-3-540-95894-9_2.
. Diversity, function and potential applications of the root-associated endophytes. In: Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Springer-Verlag, Berlin; 2008:29 -59.
. Unraveling the dark septate endophyte functions: insights from the Arabidopsis model. In: Advances in Endophytic Research. Advances in Endophytic Research. Springer-Verlag, Berlin; 2014:115 -141. doi:10.1007/978-81-322-1575-2_6.
. Abundance and possible functions of the root-colonising dark septate endophytic fungi. Studies in Mycology. 2005;53:173 -189. doi:10.3114/sim.53.1.173.
. Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales. Ecology. 2013;94:2334 -2345. doi:10.1890/12-2018.1.
Amorpha canescens and Andropogon gerardii recruit comparable foliar fungal communities across the steep precipitation gradient in Kansas. Transactions of the Kansas Academy of Science. 2023;126:31-50.
. Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots. Mycorrhiza. 2011;21:453 -464. doi:10.1007/s00572-010-0358-7.
. Arabidopsis thaliana model system reveals a continuum of responses to root endophyte colonization. Fungal Biology. 2013;117:250 -260. doi:10.1016/j.funbio.2013.02.001.
. Biogeography of root-associated fungi in foundation grasses of North American plains. Biogeography. 2022;49(1):22-37. doi:10.1111/jbi.14260.
Can rDNA analyses of diverse fungal communities in soil and rootsdetect effects of environmental manipulations--a case study from tallgrass prairie. Mycologia. 2005;97:1177 -1194. doi:10.3852/mycologia.97.6.1177.
. Connections and feedback: Aquatic, plant, and soil microbiomes in heterogeneous and changing environments. BioScience. 2020;70(7):548 - 562. doi:10.1093/biosci/biaa046.
Experimental drought re‐ordered assemblages of root‐associated fungi across North American grasslands. Journal of Ecology. 2021;109(2):776 - 792. doi:10.1111/1365-2745.13505.
FOAM: Functional Ontology Assignments for Metagenomes: a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. 2014;42: e145. doi:10.1093/nar/gku702.
Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia. 2010;102:813 -821. doi:10.3852/09-212.
. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology. 2010;19:41 -53. doi:10.1111/j.1365-294X.2009.04483.x.
. Massively parallel 454-sequencing of Quercus macrocarpa phyllosphere fungal communities indicates reduced richness and diversity in urban environments. New Phytologist. 2009;184:438 -448. doi:10.1111/j.1469-8137.2009.02990.x.
. Metaphenomic response of a native prairie soil microbiome to moisture perturbations. . mSystems. 2019;4:e00061-19. doi:10.1128/mSystems.00061-19.
Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage. Plant Signaling and Behaviour. 2010;5:1157 -1161. doi:10.4161/psb.5.9.12681.
. Mutualism-parasitism paradigm synthesized from results of root-endophyte models. Frontiers in Microbiology. 2015;5: e776. doi:10.3389/fmicb.2014.00776.
. Nitrogen enrichment causes minimal changes in arbuscular mycorrhizal colonization but shifts community composition - evidence from rDNA data. Biology and Fertility of Soils. 2005;41:217 -224. doi:10.1007/s00374-005-0845-8.
. Pleoardoris graminearum gen. et sp. nov., a new member of Pleosporales from the North American Plains, biogeography and effects on B. gracilis growth. Mycologia. In Press.
Precipitation, not land use, primarily determines the composition of both plant and phyllosphere fungal communities. Frontiers in Fungal Biology. 2022;3:805225. doi:10.3389/ffunb.2022.805225.
Repeated fire shifts carbon and nitrogen cycling by changing plant inputs and soil decomposition across ecosystems. Ecological Monographs. 2020;90(4):e01409. doi:10.1002/ecm.1409.
Scraping the bottom of the barrel: are rare high throughput sequences artifacts?. Fungal Ecology. 2015;13:221 -225. doi:10.1016/j.funeco.2014.08.006.
Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment. Mycorrhiza. 2008;18:145 -155. doi:10.1007/s00572-008-0165-6.
. Seasonally dynamic fungal communities in Quercus macrocarpa phyllosphere differ among urban and nonurban environments. New Phytologist. 2010;186:496 -513. doi:10.1111/j.1469-8137.2010.03197.x.
. Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie. Mycorrhiza. 2012;22:109 -119. doi:10.1007/s00572-011-0386-y.
. Soil fungal communities are compositionally resistant to drought manipulations – Evidence from culture-dependent and culture-independent analyses. Fungal Ecology. 2021;51:101062. doi:10.1016/j.funeco.2021.101062.
. Soil fungal community changes in response to long-term fire cessation and N fertilization in tallgrass prairie. Fungal Ecology. 2019;41:45 - 55. doi:10.1016/j.funeco.2019.03.002.
. Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology. 2016;25(18):4674 - 4688. doi:10.1111/mec.13784.
. Species abundance distributions and richness estimations in fungal metagenomics – lessons learned from community ecology. Molecular Ecology. 2011;20:275 -285. doi:10.1111/j.1365-294X.2010.04948.x.
Tallgrass prairie soil fungal communities are resilient to climate change. Fungal Ecology. 2014;10:44 -57. doi:10.1016/j.funeco.2013.11.003.
. Terabase metagenome sequencing of grassland soil microbiomes. Microbiology Resource Announcements. 2020;9(32):00718-20. doi:10.1128/MRA.00718-20.
Top - down effects of a grazing, omnivorous minnow (Campostoma anomalum) on stream microbial communities. Freshwater Science. 2018;37(1):121-133. doi:10.1086/696292.
. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia. 2010;102:1027 -1041. doi:10.3852/09-316.
. Watershed and fire severity are stronger determinants of soil chemistry and microbiomes than within-watershed woody encroachment in a tallgrass prairie system. FEMS Microbiology Ecology. 2021;97(12):fiab154. doi:10.1093/femsec/fiab154.
. Woody plant encroachment, and its removal, impact bacterial and fungal communities across stream and terrestrial habitats in a tallgrass prairie ecosystem. FEMS Microbiology Ecology. 2015;91(10):fiv109. doi:10.1093/femsec/fiv109.
. Dynamics of microbial community structure and function in a tallgrass prairie ecosystem. 2015;PhD. Dissertation. Available at: http://krex.k-state.edu/dspace/bitstream/handle/2097/19145/AllisonVeach2015.pdf?sequence=1&isAllowed=y.
. Prairie plant communities and their associated phyllosphere fungal communities change across the steep precipitation gradient in Kansas USA, though individual plant species’ phyllosphere communities may not. Department of Biology. 2023;MS Thesis. Available at: https://krex.k-state.edu/bitstream/handle/2097/43453/HannahDea2023.pdf?sequence=12.
.