Konza LTER Publications

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2023
Dea H. Prairie plant communities and their associated phyllosphere fungal communities change across the steep precipitation gradient in Kansas USA, though individual plant species’ phyllosphere communities may not. Department of Biology. 2023;MS Thesis. Available at: https://krex.k-state.edu/bitstream/handle/2097/43453/HannahDea2023.pdf?sequence=12.
2022
Dea HI, Urban A, Kazarina A, et al. Precipitation, not land use, primarily determines the composition of both plant and phyllosphere fungal communities. Frontiers in Fungal Biology. 2022;3:805225. doi:10.3389/ffunb.2022.805225.
2021
Lagueux D, Jumpponen A, Porras-Alfaro A, et al. Experimental drought re‐ordered assemblages of root‐associated fungi across North American grasslands. Journal of Ecology. 2021;109(2):776 - 792. doi:10.1111/1365-2745.13505.
Narayanan A, Ismert KJ, Smith MD, Jumpponen A. Soil fungal communities are compositionally resistant to drought manipulations – Evidence from culture-dependent and culture-independent analyses. Fungal Ecology. 2021;51:101062. doi:10.1016/j.funeco.2021.101062.
Mino L, Kolp MR, Fox S, Reazin C, Zeglin LH, Jumpponen A. Watershed and fire severity are stronger determinants of soil chemistry and microbiomes than within-watershed woody encroachment in a tallgrass prairie system. FEMS Microbiology Ecology. 2021;97(12):fiab154. doi:10.1093/femsec/fiab154.
2020
Dodds WK, Zeglin LH, Ramos RJ, et al. Connections and feedback: Aquatic, plant, and soil microbiomes in heterogeneous and changing environments. BioScience. 2020;70(7):548 - 562. doi:10.1093/biosci/biaa046.
Pellegrini AFA, Hobbie SE, Reich PB, et al. Repeated fire shifts carbon and nitrogen cycling by changing plant inputs and soil decomposition across ecosystems. Ecological Monographs. 2020;90(4):e01409. doi:10.1002/ecm.1409.
Nelson W, Anderson L, Wu R, et al. Terabase metagenome sequencing of grassland soil microbiomes. Microbiology Resource Announcements. 2020;9(32):00718-20. doi:10.1128/MRA.00718-20.
2019
Chowdhury TRoy, Lee J-Y, Bottos EM, et al. Metaphenomic response of a native prairie soil microbiome to moisture perturbations. Hallam SJ. mSystems. 2019;4:e00061-19. doi:10.1128/mSystems.00061-19.
Carson CM, Jumpponen A, Blair JM, Zeglin LH. Soil fungal community changes in response to long-term fire cessation and N fertilization in tallgrass prairie. Fungal Ecology. 2019;41:45 - 55. doi:10.1016/j.funeco.2019.03.002.
2018
Veach AM, Troia MJ, Jumpponen A, Dodds WK. Top - down effects of a grazing, omnivorous minnow (Campostoma anomalum) on stream microbial communities. Freshwater Science. 2018;37(1):121-133. doi:10.1086/696292.
2017
Jumpponen A, Herrera J, Porras-Alfaro A, Rudgers J. Biogeography of root-associated endophytes. In: Biogeography of Mycorrhizal Symbiosis. Cham: Springer International Publishing; 2017:195-222. doi:10.1007/978-3-319-56363-3.
2016
Veach AM, Stagen JC, Brown SP, Dodds WK, Jumpponen A. Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem. Molecular Ecology. 2016;25(18):4674 - 4688. doi:10.1111/mec.13784.
2015
Veach AM. Dynamics of microbial community structure and function in a tallgrass prairie ecosystem. 2015;PhD. Dissertation. Available at: http://krex.k-state.edu/dspace/bitstream/handle/2097/19145/AllisonVeach2015.pdf?sequence=1&isAllowed=y.
Mandyam KG, Jumpponen A. Mutualism-parasitism paradigm synthesized from results of root-endophyte models. Frontiers in Microbiology. 2015;5: e776. doi:10.3389/fmicb.2014.00776.
Brown SP, Veach AM, Rigdon-Huss AR, et al. Scraping the bottom of the barrel: are rare high throughput sequences artifacts?. Fungal Ecology. 2015;13:221 -225. doi:10.1016/j.funeco.2014.08.006.
Veach AM, Dodds WK, Jumpponen A. Woody plant encroachment, and its removal, impact bacterial and fungal communities across stream and terrestrial habitats in a tallgrass prairie ecosystem. FEMS Microbiology Ecology. 2015;91(10):fiv109. doi:10.1093/femsec/fiv109.
2014
Prestat E, David M, Hultman J, et al. FOAM: Functional Ontology Assignments for Metagenomes: a Hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Research. 2014;42: e145. doi:10.1093/nar/gku702.
Jumpponen A, Jones KL. Tallgrass prairie soil fungal communities are resilient to climate change. Fungal Ecology. 2014;10:44 -57. doi:10.1016/j.funeco.2013.11.003.
Mandyam KG, Jumpponen A. Unraveling the dark septate endophyte functions: insights from the Arabidopsis model. In: Verma VC, Gange AC Advances in Endophytic Research. Advances in Endophytic Research. Springer-Verlag, Berlin; 2014:115 -141. doi:10.1007/978-81-322-1575-2_6.
2013
Jumpponen A, Mandyam KG. Adoption and utility of an Arabidopsis model to dissect endophyte symbioses. In: Schneider C, Leifert C, Feldmann F Endophytes in plant protection: the state of the art. Endophytes in plant protection: the state of the art. Braunschweig: Deutsche Phytomedizinische Gesellschaft; 2013:244 -247.
Zeglin LH, Bottomley PJ, Jumpponen A, et al. Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales. Ecology. 2013;94:2334 -2345. doi:10.1890/12-2018.1.
Mandyam KG, Roe J, Jumpponen A. Arabidopsis thaliana model system reveals a continuum of responses to root endophyte colonization. Fungal Biology. 2013;117:250 -260. doi:10.1016/j.funbio.2013.02.001.
Jumpponen A, Zeglin LH, David M, et al. Fungal community responses to discrete precipitation pulses under altered rainfall intervals. 2013;103:182 -.
2012
Mandyam KG, Fox C, Jumpponen A. Septate endophyte colonization and host responses of grasses and forbs native to a tallgrass prairie. Mycorrhiza. 2012;22:109 -119. doi:10.1007/s00572-011-0386-y.
2011
Jumpponen A. Analysis of ribosomal RNA indicates seasonal fungal community dynamics in Andropogon gerardii roots. Mycorrhiza. 2011;21:453 -464. doi:10.1007/s00572-010-0358-7.
Unterseher M, Dorman CF, Jumpponen A, et al. Species abundance distributions and richness estimations in fungal metagenomics – lessons learned from community ecology. Molecular Ecology. 2011;20:275 -285. doi:10.1111/j.1365-294X.2010.04948.x.
2010
Mandyam KG, Loughlin T, Jumpponen A. Isolation and morphological and metabolic characterization of common endophytes in annually burned tallgrass prairie. Mycologia. 2010;102:813 -821. doi:10.3852/09-212.
Jumpponen A, Jones KL, Mattox JD, Yeage C. Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Molecular Ecology. 2010;19:41 -53. doi:10.1111/j.1365-294X.2009.04483.x.
Jumpponen A, Keating K, Gadbury GL, Jones KL, Mattox JD. Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage. Plant Signaling and Behaviour. 2010;5:1157 -1161. doi:10.4161/psb.5.9.12681.
Jumpponen A, Jones KL. Seasonally dynamic fungal communities in Quercus macrocarpa phyllosphere differ among urban and nonurban environments. New Phytologist. 2010;186:496 -513. doi:10.1111/j.1469-8137.2010.03197.x.
Jumpponen A, Jones KL, Blair JM. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia. 2010;102:1027 -1041. doi:10.3852/09-316.
2009
Jumpponen A. Analysis of rhizosphere fungal communities using rRNA and rDNA. In: Varma A, Kharkwal AC Symbiotic Fungi, Soil Biology. Symbiotic Fungi, Soil Biology. Springer-Verlag, Berlin; 2009:29 -40. Available at: http://link.springer.com/chapter/10.1007%2F978-3-540-95894-9_2.
Jumpponen A, Jones KL. Massively parallel 454-sequencing of Quercus macrocarpa phyllosphere fungal communities indicates reduced richness and diversity in urban environments. New Phytologist. 2009;184:438 -448. doi:10.1111/j.1469-8137.2009.02990.x.
2008
Kageyama SA, Mandyam KG, Jumpponen A. Diversity, function and potential applications of the root-associated endophytes. In: Varma A Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Mycorrhiza Genetics and Molecular Biology, Eco-Function, Biotechnology, Ecophysiology, Structure and Systematics. Springer-Verlag, Berlin; 2008:29 -59.
Mandyam KG, Jumpponen A. Seasonal and temporal dynamics of arbuscular mycorrhizal and dark septate endophytic fungi in a tallgrass prairie ecosystem are minimally affected by nitrogen enrichment. Mycorrhiza. 2008;18:145 -155. doi:10.1007/s00572-008-0165-6.
2005
Mandyam KG, Jumpponen A. Abundance and possible functions of the root-colonising dark septate endophytic fungi. Studies in Mycology. 2005;53:173 -189. doi:10.3114/sim.53.1.173.
Jumpponen A, Johnson LC. Can rDNA analyses of diverse fungal communities in soil and rootsdetect effects of environmental manipulations--a case study from tallgrass prairie. Mycologia. 2005;97:1177 -1194. doi:10.3852/mycologia.97.6.1177.
Jumpponen A, Trowbridge J, Mandyam KG, Johnson LC. Nitrogen enrichment causes minimal changes in arbuscular mycorrhizal colonization but shifts community composition - evidence from rDNA data. Biology and Fertility of Soils. 2005;41:217 -224. doi:10.1007/s00374-005-0845-8.